3x01 The Blessing Way
Written by Chris Carter
Directed by R W Goodwin
Airdate: 22 September 1995
As Scully faces possible dismissal from the FBI, a manhunt ensues for the missing Agent Mulder.
3x02 Paper Clip
Written by Chris Carter
Directed by Rob Bowman
Airdate: 29 September 1995
As a government hit squad closes in on the agents, Mulder searches for clues about his father's involvement in a secret project.
3x03 D.P.O.
Written by Howard Gordon
Directed by Kim Manners
Airdate: 6 October 1995
The agents investigate the deaths of several young people who were apparently struck by lightning in the same small town.
3x04 Clyde Bruckman's Final Repose
Written by Darin Morgan
Directed by David Nutter
Airdate: 13 October 1995
A man with psychic powers assists the agents with the hunt for a killer.
3x05 The List
Written by Chris Carter
Directed by Chris Carter
Airdate: 20 October 1995
Enemies of a prison inmate who died in the electric chair begin dying one by one.
3x06 2Shy
Written by Jeffrey Vlaming
Directed by David Nutter
Airdate: 3 November 1995
The agents hunt for a killer who uses the internet to attract his victims.
3x07 The Walk
Written by John Shiban
Directed by Rob Bowman
Airdate: 10 November 1995
A quadruple amputee becomes the prime suspect in a series of bizarre deaths.
3x08 Oubliette
Written by Charles Grant Craig
Directed by Kim Manners
Airdate: 17 November 1995
A woman experiences a psychic connection with a teenager held captive by a deranged man.
3x09 Nisei
Written by Chris Carter, Howard Gordon and Frank Spotnitz
Directed by David Nutter
Airdate: 24 November 1995
An "alien autopsy" videotape and a Japanese diplomat's murder spark Mulder's search for a strange creature aboard a train. Scully encounters a group of people who reveal information about her disappearance.
3x10 731
Written by Frank Spotnitz
Directed by Rob Bowman
Airdate: 1 December 1995
When Mulder becomes trapped aboard a train rigged with an explosive device, Scully searches for the truth behind the government's involvement with secret experiments.
3x11 Revelations
Written by Kim Newton
Directed by David Nutter
Airdate: 15 December 1995
Scully attempts to protect a boy whose death could trigger the coming of Armageddon.
3x12 War of the Coprophages
Written by Darin Morgan
Directed by Kim Manners
Airdate: 5 January 1996
The agents come to the aid of a town seemingly under attack by killer cockroaches.
3x13 Syzygy
Written by Chris Carter
Directed by Rob Bowman
Airdate: 26 January 1996
A rare alignment of the planets gives two teenaged girls dangerous telekinetic powers.
3x14 Grotesque
Written by Howard Gordon
Directed by Kim Manners
Airdate: 2 February 1996
Mulder becomes obsessed with a case involving an incarcerated serial killer who claims he was possessed by a gargoyle.
3x15 Piper Maru
Written by Frank Spotnitz and Chris Carter
Directed by Rob Bowman
Airdate: 9 February 1996
The agents investigate the mystery surrounding a sunken World War II aircraft.
3x16 Apocrypha
Written by Frank Spotnitz and Chris Carter
Directed by Kim Manners
Airdate: 16 February 1996
Mulder uncovers more clues about a government cover-up involving an alien entity and a sunken World War II aircraft. Scully pursues the man who murdered her sister.
Commentary by Chris Carter and Kim Manners
3x17 Pusher
Written by Vince Gilligan
Directed by Rob Bowman
Airdate: 23 February 1996
The agents play a deadly game of cat-and-mouse with a killer who can control people's minds.
3x18 Teso Dos Bichos
Written by John Shiban
Directed by Kim Manners
Airdate: 8 March 1996
A curse befalls members of an archeological team after a sacred urn is excavated in South America and transported to a Boston museum.
3x19 Hell Money
Written by Jeff Vlaming
Directed by Tucker Gates
Airdate: 29 March 1996
The agents investigate a deadly game in San Francisco's Chinatown district.
3x20 Jose Chung's "From Outer Space"
Written by Darin Morgan
Directed by Rob Bowman
Airdate: 12 March 1996
Scully recounts the investigation of an alleged UFO encounter for a famous author researching his latest novel.
Commentary by Rob Bowman and Darin Morgan
3x21 Avatar
Story by David Duchovny and Howard Gordon
Teleplay by Howard Gordon
Directed by James Charleston
Airdate: 26 April 1996
Skinner becomes the prime suspect in the murder of a prostitute.
3x22 Quagmire
Written by Kim Newton
Directed by Kim Manners
Airdate: 3 May 1996
Mulder suspects that a beast similar to the Loch Ness monster is responsible for the deaths of several people who reside near a large lake.
3x23 Wetwired
Written by Mat Beck
Directed by Rob Bowman
Airdate: 10 May 1996
The agents investigate a series of murders linked to a device that alters television signals.
3x24 Talitha Cumi
Story by David Duchovny and Chris Carter
Teleplay by Chris Carter
Directed by R W Goodwin
Airdate: 17 May 1996
After his mother suffers a stroke, Mulder searches for an alien being who possesses miraculous healing powers.